The Musculoskeletal Knowledge Portal: Making Omics Data Useful to the Broader Scientific Community

Douglas P. Kiel, John P. Kemp, Fernando Rivadeneira, Jennifer J. Westendorf, David Karasik, Emma L. Duncan, Yuuki Imai, Ralph Müller, Jason Flannick, Lynda Bonewald, Noël Burtt

Research output: Contribution to journalReview articlepeer-review

23 Scopus citations

Abstract

The development of high-throughput genotyping technologies and large biobank collections, complemented with rapid methodological advances in statistical genetics, has enabled hypothesis-free genome-wide association studies (GWAS), which have identified hundreds of genetic variants across many loci associated with musculoskeletal conditions. Similarly, basic scientists have valuable molecular cellular and animal data based on musculoskeletal disease that would be enhanced by being able to determine the human translation of their findings. By integrating these large-scale human genomic musculoskeletal datasets with complementary evidence from model organisms, new and existing genetic loci can be statistically fine-mapped to plausibly causal variants, candidate genes, and biological pathways. Genes and pathways identified using this approach can be further prioritized as drug targets, including side-effect profiling and the potential for new indications. To bring together these big data, and to realize the vision of creating a knowledge portal, the International Federation of Musculoskeletal Research Societies (IFMRS) established a working group to collaborate with scientists from the Broad Institute to create the Musculoskeletal Knowledge Portal (MSK-KP)(http://mskkp.org/). The MSK consolidates omics datasets from humans, cellular experiments, and model organisms into a central repository that can be accessed by researchers. The vision of the MSK-KP is to enable better understanding of the biological mechanisms underlying musculoskeletal disease and apply this knowledge to identify and develop new disease interventions.

Original languageEnglish
Pages (from-to)1626-1633
Number of pages8
JournalJournal of Bone and Mineral Research
Volume35
Issue number9
DOIs
StatePublished - 1 Sep 2020

Bibliographical note

Publisher Copyright:
© 2020 American Society for Bone and Mineral Research (ASBMR)

Funding

Support from the International Federation of Musculoskeletal Research Societies (IFMRS), the University of Indiana, the University of Colorado at Denver, the American Society of Bone and Mineral Research, the European Calcified Tissue Society, the Cancer and Bone Society, the Japanese Society for Bone and Mineral Research, ETH Zurich, the Orthopaedic Research Society and the Broad Institute of MIT & Harvard were used to establish the MSK-KP. We would like to acknowledge contributions from other members of the IFMRS Big Data Working Group and their affiliated research societies, including the ASBMR (American Society for Bone and Mineral Research) [Douglas P. Kiel, Lynda Bonewald, David Karasik, Jane Lian]; ANZBMS (Australian and New Zealand Bone and Mineral Society) [Emma L Duncan, John Kemp]; European Calcified Tissue Society (ECTS) [Fernando Rivadeneira]; International Chinese Musculoskeletal Research Society (ICMRS) [Qing Wu]; Japanese Society of Bone and Mineral Research (JSBMR) [Yuuki Imai, Yoshiya Tanaka]; Ibero American Society of Osteology and Mineral Metabolism (SIBOMM) [Merce Giner, Aranzazu Rodriguez de Gortázar Alonso-Villalobos]; Orthopaedic Research Society (ORS) [Jennifer Westendorf, Nidhi Bhutani, Muhammad Farooq Rai]; and International Society of Bone Morphometry (ISBM) [Ralph Müller]. We also acknowledge collaboration with the GEMSTONE COST ACTION (CA18139).

FundersFunder number
ANZBMS
Australian and New Zealand Bone and Mineral Society
Cancer and Bone Society
IFMRS Big Data Working Group
Ibero American Society of Osteology and Mineral Metabolism
International Chinese Musculoskeletal Research Society
International Federation of Musculoskeletal Research Societies
International Society of Bone MorphometryCA18139
Japanese Society for Bone and Mineral Research
Japanese Society of Bone and Mineral Research
SIBOMM
National Institute on AgingP01AG039355
National Institute of Arthritis and Musculoskeletal and Skin DiseasesR01AR041398
Indiana University
University of Colorado Denver
American Society for Bone and Mineral Research
Broad Institute
European Calcified Tissue Society
Eidgenössische Technische Hochschule Zürich

    Keywords

    • DISEASES AND DISORDERS OF/RELATED TO BONE
    • EPIGENETICS
    • GENETIC RESEARCH
    • OSTEOARTHRITIS
    • OSTEOPOROSIS

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