PHI-DAC: Protein homology database through dihedral angle conservation

Noa Maatuk, Yitav Glantz-Gashai, Maya Rotman, Meirav Baydany, Gennadiy Fonar, Amir Shechvitz, Karin Shemer, Aviva Peleg, Eli Reuveni, Abraham O. Samson

Research output: Contribution to journalArticlepeer-review

Abstract

Finding related conformations in the Protein Data Bank is essential in many areas of bioscience. To assist this task, we designed a dihedral angle database for searching protein segment homologs. The search engine relies on encoding of the protein coordinates into text characters representing amino acid sequence, ω and ψ dihedral angles. The search engine is advantageous owing to its high speed and interactive nature and is expected to assist scientists in discovering conformation homologs and evolutionary kinship.

Original languageEnglish
Pages (from-to)292-294
Number of pages3
JournalBioinformatics
Volume31
Issue number2
DOIs
StatePublished - 15 Jan 2015

Bibliographical note

Publisher Copyright:
© The Author 2014. Published by Oxford University Press. All rights reserved.

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