TY - JOUR
T1 - Objective comparison of methods to decode anomalous diffusion
AU - Muñoz-Gil, Gorka
AU - Volpe, Giovanni
AU - Garcia-March, Miguel Angel
AU - Aghion, Erez
AU - Argun, Aykut
AU - Hong, Chang Beom
AU - Bland, Tom
AU - Bo, Stefano
AU - Conejero, J. Alberto
AU - Firbas, Nicolás
AU - Garibo i Orts, Òscar
AU - Gentili, Alessia
AU - Huang, Zihan
AU - Jeon, Jae Hyung
AU - Kabbech, Hélène
AU - Kim, Yeongjin
AU - Kowalek, Patrycja
AU - Krapf, Diego
AU - Loch-Olszewska, Hanna
AU - Lomholt, Michael A.
AU - Masson, Jean Baptiste
AU - Meyer, Philipp G.
AU - Park, Seongyu
AU - Requena, Borja
AU - Smal, Ihor
AU - Song, Taegeun
AU - Szwabiński, Janusz
AU - Thapa, Samudrajit
AU - Verdier, Hippolyte
AU - Volpe, Giorgio
AU - Widera, Artur
AU - Lewenstein, Maciej
AU - Metzler, Ralf
AU - Manzo, Carlo
N1 - Publisher Copyright:
© 2021, The Author(s).
PY - 2021/10/29
Y1 - 2021/10/29
N2 - Deviations from Brownian motion leading to anomalous diffusion are found in transport dynamics from quantum physics to life sciences. The characterization of anomalous diffusion from the measurement of an individual trajectory is a challenging task, which traditionally relies on calculating the trajectory mean squared displacement. However, this approach breaks down for cases of practical interest, e.g., short or noisy trajectories, heterogeneous behaviour, or non-ergodic processes. Recently, several new approaches have been proposed, mostly building on the ongoing machine-learning revolution. To perform an objective comparison of methods, we gathered the community and organized an open competition, the Anomalous Diffusion challenge (AnDi). Participating teams applied their algorithms to a commonly-defined dataset including diverse conditions. Although no single method performed best across all scenarios, machine-learning-based approaches achieved superior performance for all tasks. The discussion of the challenge results provides practical advice for users and a benchmark for developers.
AB - Deviations from Brownian motion leading to anomalous diffusion are found in transport dynamics from quantum physics to life sciences. The characterization of anomalous diffusion from the measurement of an individual trajectory is a challenging task, which traditionally relies on calculating the trajectory mean squared displacement. However, this approach breaks down for cases of practical interest, e.g., short or noisy trajectories, heterogeneous behaviour, or non-ergodic processes. Recently, several new approaches have been proposed, mostly building on the ongoing machine-learning revolution. To perform an objective comparison of methods, we gathered the community and organized an open competition, the Anomalous Diffusion challenge (AnDi). Participating teams applied their algorithms to a commonly-defined dataset including diverse conditions. Although no single method performed best across all scenarios, machine-learning-based approaches achieved superior performance for all tasks. The discussion of the challenge results provides practical advice for users and a benchmark for developers.
UR - http://www.scopus.com/inward/record.url?scp=85118577683&partnerID=8YFLogxK
U2 - 10.1038/s41467-021-26320-w
DO - 10.1038/s41467-021-26320-w
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C2 - 34716305
AN - SCOPUS:85118577683
SN - 2041-1723
VL - 12
JO - Nature Communications
JF - Nature Communications
IS - 1
M1 - 6253
ER -