Microtubule motional diffusion coefficient in motility assays is determined by heterogeneity in motor stiffness

Henri Palacci, Ofer Idan, Megan J. Armstrong, Takahiro Nitta, Henry Hess

Research output: Contribution to journalConference articlepeer-review

Abstract

In the past twenty years, our ability to manipulate and engineer devices at the nano-scale has grown exponentially. As the fabrication of autonomous systems at these scales becomes a reality, the observation of biological structures can help us understand general design principles at the nano-scale. The gliding motility assay is an excellent model system for the observation of collective behavior of coupled motors. Indeed, hundreds of surface-Adhered kinesin motors propel one microtubule filament (Figure 1). Filament motion has been observed using fluorescence microscopy, revealing fluctuations in gliding velocity [3; 4]. We here theoretically characterize the motional diffusion coefficients through the heterogeneity factor proposed by Sekimoto and Tawada [5], and use a Brownian dynamics simulation of kinesin head diffusion under an anharmonic potential to determine a theoretical value of 0.3 for this heterogeneity factor.

Bibliographical note

Publisher Copyright:
© 2016 ICST.

Keywords

  • Brownian dynamics
  • Kinesin
  • Microtubule
  • Motility assay
  • Motor protein

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