TY - JOUR
T1 - Locating particles accurately in microscope images requires image-processing kernels to be rotationally symmetric
AU - Lu, Peter J.
AU - Shutman, Maor
AU - Sloutskin, Eli
AU - Butenko, Alexander V.
PY - 2013/12/16
Y1 - 2013/12/16
N2 - Computerized image-analysis routines deployed widely to locate and track the positions of particles in microscope images include several steps where images are convolved with kernels to remove noise. In many common implementations, some kernels are rotationally asymmetric. Here we show that the use of these asymmetric kernels creates significant artifacts, distorting apparent particle positions in a way that gives the artificial appearance of orientational crystalline order, even in such fully-disordered isotropic systems as simple fluids of hard-sphere-like colloids. We rectify this problem by replacing all asymmetric kernels with rotationally-symmetric kernels, which does not impact code performance. We show that these corrected codes locate particle positions properly, restoring measured isotropy to colloidal fluids. We also investigate rapidlyformed colloidal sediments, and with the corrected codes show that these sediments, often thought to be amorphous, may exhibit strong orientational correlations among bonds between neighboring colloidal particles.
AB - Computerized image-analysis routines deployed widely to locate and track the positions of particles in microscope images include several steps where images are convolved with kernels to remove noise. In many common implementations, some kernels are rotationally asymmetric. Here we show that the use of these asymmetric kernels creates significant artifacts, distorting apparent particle positions in a way that gives the artificial appearance of orientational crystalline order, even in such fully-disordered isotropic systems as simple fluids of hard-sphere-like colloids. We rectify this problem by replacing all asymmetric kernels with rotationally-symmetric kernels, which does not impact code performance. We show that these corrected codes locate particle positions properly, restoring measured isotropy to colloidal fluids. We also investigate rapidlyformed colloidal sediments, and with the corrected codes show that these sediments, often thought to be amorphous, may exhibit strong orientational correlations among bonds between neighboring colloidal particles.
UR - http://www.scopus.com/inward/record.url?scp=84890487835&partnerID=8YFLogxK
U2 - 10.1364/OE.21.030755
DO - 10.1364/OE.21.030755
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C2 - 24514652
SN - 1094-4087
VL - 21
SP - 30755
EP - 30763
JO - Optics Express
JF - Optics Express
IS - 25
ER -