Locating particles accurately in microscope images requires image-processing kernels to be rotationally symmetric

Peter J. Lu, Maor Shutman, Eli Sloutskin, Alexander V. Butenko

Research output: Contribution to journalArticlepeer-review

20 Scopus citations

Abstract

Computerized image-analysis routines deployed widely to locate and track the positions of particles in microscope images include several steps where images are convolved with kernels to remove noise. In many common implementations, some kernels are rotationally asymmetric. Here we show that the use of these asymmetric kernels creates significant artifacts, distorting apparent particle positions in a way that gives the artificial appearance of orientational crystalline order, even in such fully-disordered isotropic systems as simple fluids of hard-sphere-like colloids. We rectify this problem by replacing all asymmetric kernels with rotationally-symmetric kernels, which does not impact code performance. We show that these corrected codes locate particle positions properly, restoring measured isotropy to colloidal fluids. We also investigate rapidlyformed colloidal sediments, and with the corrected codes show that these sediments, often thought to be amorphous, may exhibit strong orientational correlations among bonds between neighboring colloidal particles.

Original languageEnglish
Pages (from-to)30755-30763
Number of pages9
JournalOptics Express
Volume21
Issue number25
DOIs
StatePublished - 16 Dec 2013

Funding

FundersFunder number
National Science Foundation1310266

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