Innovative Cyclic Nucleotides – Nucleoside 2′,3′-Seven-Membered Cyclic Diphosphonate Derivatives. Theoretical Feasibility, Synthesis, and Properties

Sveta Liberman, Lea Bobot, Hadar T. Ben Daniel, Dan T. Major, Bilha Fischer

Research output: Contribution to journalArticlepeer-review

Abstract

7-membered cyclic nucleotides have remained unknown despite the natural abundance of their 5- and 6-membered counterparts. Here, we report the first synthesis of 2′,3′-cyclic nucleosides (tetrathio)diphosphonate (2′,3′-cNTDPs) by a rapid one-step, regioselective, and protection-free reaction of U, A, C, I, and G, with methylene-bis(1,3,2-dithia-phospholane-2-sulfide) (DTPS). The reaction proceeds instantaneously, even at -35 °C, resulting in the quantitative conversion of methylene-bis-DTPS. Density functional theory (DFT) calculations of ∆Gr confirm the synthetic feasibility and regioselectivity, attributing the efficiency to strain release in DTPS rings and entropic gain from thiirane elimination. The resulting 2′,3′-cNTDPs exhibited remarkable hydrolytic stability and greater solution structural rigidity than free nucleosides.

Original languageEnglish
Article numbere202501228
JournalChemistry - A European Journal
Volume31
Issue number36
Early online date25 May 2025
DOIs
StatePublished - 26 Jun 2025

Bibliographical note

Publisher Copyright:
© 2025 The Author(s). Chemistry – A European Journal published by Wiley-VCH GmbH.

Keywords

  • 1,3,2-dithia-phospholane-2-sulfide ring
  • DFT calculations
  • natural products
  • phosphorylation
  • synthesis of cyclic nucleotides

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