Genome sequences of 18 foot-and-mouth disease virus outbreak strains of serotype O sublineage IND2001D from India, 2013 to 2014

Miranda R. Bertram; Rachel M. Palinski; Rajeev Ranjan; Jitendra K. Biswal; Steven J. Pauszek; Ethan J. Hartwig; George R. Smoliga; Ian H. Fish; David Vierra; Saravanan Subramaniam; Jajati K. Mohapatra; Biswajit Das; Bramhadev Pattnaik; Jonathan Arzt

doi:10.1128/MRA.00776-19

Genome sequences of 18 foot-and-mouth disease virus outbreak strains of serotype O sublineage IND2001D from India, 2013 to 2014

Miranda R. Bertram, Rachel M. Palinski, Rajeev Ranjan, Jitendra K. Biswal, Steven J. Pauszek, Ethan J. Hartwig, George R. Smoliga, Ian H. Fish, David Vierra, Saravanan Subramaniam, Jajati K. Mohapatra, Biswajit Das, Bramhadev Pattnaik, Jonathan Arzt

Research output: Contribution to journal › Review article › peer-review

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Abstract

We report the full polyprotein-coding sequences and partial untranslated regions (UTRs) of 18 foot-and-mouth disease (FMD) viruses from 4 outbreaks in India in 2013 and 2014. All strains grouped within the O/ME-SA/Ind2001d sublineage. These genomes update knowledge of FMD virus (FMDV) diversity in South Asia and may contribute to molecular epidemiology studies and vaccine selections.

Original language	English
Article number	e00776-19
Journal	Microbiology Resource Announcements
Volume	8
Issue number	33
DOIs	https://doi.org/10.1128/MRA.00776-19
State	Published - 15 Aug 2019
Externally published	Yes

Bibliographical note

Publisher Copyright:
© 2019 American Society for Microbiology. All rights reserved.

Funding

This research was funded in part by ARS-CRIS project 1940-32000-061-00D. Additional funding was provided by the Biosecurity Engagement Program of the U.S. Department of State. Miranda R. Bertram and Ian H. Fish were the recipients of a Plum Island Animal Disease Center Research Participation Program fellowship, administered by the Oak Ridge Institute for Science and Education (ORISE) through an interagency agreement between the U.S. Department of Energy (DOE) and the U.S. Department of Agriculture (USDA). This research was funded in part by ARS-CRIS project 1940-32000-061-00D. Additional funding was provided by the Biosecurity Engagement Program of the U.S. Department of State. Miranda R. Bertram and Ian H. Fish were the recipients of a Plum Island Animal Disease Center Research Participation Program fellowship, administered by the Oak Ridge Institute for Science and Education (ORISE) through an interagency agreement between the U.S. Department of Energy (DOE) and the U.S. Department of Agriculture (USDA). All opinions expressed in this paper are those of the authors and do not necessarily reflect the policies and views of the USDA, APHIS, DOE, or ORAU/ORISE. We are thankful to Indian Council of Agricultural Research, New Delhi, India, for providing necessary facilities to carry out this collaborative work at the DFMD, Mukteshwar, India.

Funders	Funder number
DFMD
Plum Island Animal Disease Center
U.S. Department of Energy
U.S. Department of State
U.S. Department of Agriculture
Oak Ridge Institute for Science and Education
Animal and Plant Health Inspection Service
Indian Council of Agricultural Research

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Bertram, M. R., Palinski, R. M., Ranjan, R., Biswal, J. K., Pauszek, S. J., Hartwig, E. J., Smoliga, G. R., Fish, I. H., Vierra, D., Subramaniam, S., Mohapatra, J. K., Das, B., Pattnaik, B., & Arzt, J. (2019). Genome sequences of 18 foot-and-mouth disease virus outbreak strains of serotype O sublineage IND2001D from India, 2013 to 2014. Microbiology Resource Announcements, 8(33), Article e00776-19. https://doi.org/10.1128/MRA.00776-19

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abstract = "We report the full polyprotein-coding sequences and partial untranslated regions (UTRs) of 18 foot-and-mouth disease (FMD) viruses from 4 outbreaks in India in 2013 and 2014. All strains grouped within the O/ME-SA/Ind2001d sublineage. These genomes update knowledge of FMD virus (FMDV) diversity in South Asia and may contribute to molecular epidemiology studies and vaccine selections.",

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Bertram, MR, Palinski, RM, Ranjan, R, Biswal, JK, Pauszek, SJ, Hartwig, EJ, Smoliga, GR, Fish, IH, Vierra, D, Subramaniam, S, Mohapatra, JK, Das, B, Pattnaik, B & Arzt, J 2019, 'Genome sequences of 18 foot-and-mouth disease virus outbreak strains of serotype O sublineage IND2001D from India, 2013 to 2014', Microbiology Resource Announcements, vol. 8, no. 33, e00776-19. https://doi.org/10.1128/MRA.00776-19

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AU - Fish, Ian H.

AU - Vierra, David

AU - Subramaniam, Saravanan

AU - Mohapatra, Jajati K.

AU - Das, Biswajit

AU - Pattnaik, Bramhadev

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Genome sequences of 18 foot-and-mouth disease virus outbreak strains of serotype O sublineage IND2001D from India, 2013 to 2014

Abstract

Bibliographical note

Funding

UN SDGs

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