Exploring the scope of the 29G12 antibody catalyzed 1,3-dipolar cycloaddition reaction

Jonathan D. Toker, Martin R. Tremblay, Jari Yli-Kauhaluoma, Anita D. Wentworth, Bin Zhou, Paul Wentworth, Kim D. Janda

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15 Scopus citations


29G12 is a murine monoclonal antibody programmed to catalyze the regio- and enantioselective 1,3-dipolar cycloaddition reaction between 4-acetamidobenzonitrile N-oxide 1a and N,N-dimethylacrylamide 2a (Toker, J. D.; Wentworth, P., Jr.; Hu, Y.; Houk, K. N.; Janda, K. D. J. Am. Chem. Soc. 2000, 122, 3244). Given the unique nature of 29G12 as a protein biocatalyst for this chemical reaction, we have investigated both the substrate specificity and mechanistic parameters of the 29G12-catalyzed process. These studies have shown that while 29G12 is specific for its dipole substrate Ia, the antibody is highly promiscuous with respect to the dipolarophiles it can process. 29G12 accepts a bulky hydrophobic dipolarophile cosubstrate, with rates of product formation up to 70-fold faster than with the original substrate 2a. In all cases, the respective isoxazoline products are produced with exquisite regio- and stereochemical control (78-98% ee). Comparison between the steady-state kinetic parameters from the 29G12-catalyzed reaction of 1a with the most efficient versus the original dipolarophile cosubstrate (2m and 2a, respectively), reveals that while the effective molarities (EM)s are almost identical (EM (2m) 26 M; EM(2a) 23 M), the affinity of 29G12 for the larger dipolarophile 2m is more than 1 order of magnitude higher than for 2a [Km(2m) 0.44 ± 0.04 mM; Km(2a) 5.8 ± 0.4 mM]. Furthermore, when 2m is the cosubstrate, the affinity of 29G12 for its dipole 1a is also greatly improved [Km(1a) 0.82 ± 0.1 mM compared to Km(1a) 3.4 ± 0.4 mM when 2a is the cosubstrate]. An analysis of the temperature dependence of the 29G12-catalyzed reaction between 1a and 2m reveals that catalysis is achieved via a decrease in enthalpy of activation (ΔΔH‡ 4.4 kcal mol-1) and involves a large increase in the entropy of activation (ΔΔS‡ 10.4 eu). The improved affinity of 29G12 for the nitrile oxide Ia in the presence of 2m, coupled with the increase in ΔΔS‡ during the 29G12-catalyzed reaction between 1a and 2m supports the notion of a structural reorganization of the active site to facilitate this antibody-catalyzed reaction.

Original languageEnglish
Pages (from-to)7810-7815
Number of pages6
JournalJournal of Organic Chemistry
Issue number20
StatePublished - 30 Sep 2005
Externally publishedYes


FundersFunder number
National Institute of General Medical SciencesR01GM043858


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