Evolution of weak cooperative interactions for biological specificity

Ang Gao, Krishna Shrinivas, Paul Lepeudry, Hiroshi I. Suzuki, Phillip A. Sharp, Arup K. Chakraborty

Research output: Contribution to journalArticlepeer-review

32 Scopus citations

Abstract

A hallmark of biological systems is that particular functions and outcomes are realized in specific contexts, such as when particular signals are received. One mechanism for mediating specificity is described by Fisher’s “lock and key” metaphor, exemplified by enzymes that bind selectively to a particular substrate via specific finely tuned interactions. Another mechanism, more prevalent in multicellular organisms, relies on multivalent weak cooperative interactions. Its importance has recently been illustrated by the recognition that liquid-liquid phase transitions underlie the formation of mem-braneless condensates that perform specific cellular functions. Based on computer simulations of an evolutionary model, we report that the latter mechanism likely became evolutionarily prominent when a large number of tasks had to be performed specifically for organisms to function properly. We find that the emergence of weak cooperative interactions for mediating specificity results in organisms that can evolve to accomplish new tasks with fewer, and likely less lethal, mutations. We argue that this makes the system more capable of undergoing evolutionary changes robustly, and thus this mechanism has been repeatedly positively selected in increasingly complex organisms. Specificity mediated by weak cooperative interactions results in some useful cross-reactivity for related tasks, but at the same time increases susceptibility to misregulation that might lead to pathologies.

Original languageEnglish
Pages (from-to)E11053-E11060
JournalProceedings of the National Academy of Sciences of the United States of America
Volume115
Issue number47
DOIs
StatePublished - 20 Nov 2018
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2018 National Academy of Sciences. All rights reserved.

Funding

ACKNOWLEDGMENTS. This research was supported by the NSF Grant PHY-1743900 (to A.K.C. and P.A.S.); the Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard (A.K.C.); Koch Institute Support (core) Grant (P30-CA14051) from the National Cancer Institute (to P.A.S.); and NIH Grant P01-CA042063 (to P.A.S.). This research was supported by the NSF Grant PHY-1743900 (to A.K.C. and P.A.S.); the Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard (A.K.C.); Koch Institute Support (core) Grant (P30-CA14051) from the National Cancer Institute (to P.A.S.); and NIH Grant P01-CA042063 (to P.A.S.).

FundersFunder number
Massachusetts Institute of Technology, and Harvard
Ragon Institute of Massachusetts General Hospital
National Science FoundationPHY-1743900
National Institutes of Health
National Cancer InstituteP01CA042063
Massachusetts Institute of TechnologyP30-CA14051

    Keywords

    • Evolvability
    • Gene regulation
    • Phase separation
    • Specificity
    • Weak cooperative interactions

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