Abstract
Recently, a new pattern matching paradigm was proposed, pattern matching with address errors. In this paradigm approximate string matching problems are studied, where the content is unaltered and only the locations of the different entries may change. Specifically, a broad class of problems was defined-the class of rearrangement errors. In this type of error the pattern is transformed through a sequence of rearrangement operations, each with an associated cost. The natural ℓ1 and ℓ2 rearrangement systems were considered. The best algorithm presented for general patterns, that may have repeating symbols, is O (n m). In this paper, we show that the problem can be approximated in linear time for general patterns! Another natural rearrangement system is considered in this paper-the ℓ∞ rearrangement distance. For this new rearrangement system efficient exact solutions for different variants of the problem are provided, as well as a faster approximation.
Original language | English |
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Pages (from-to) | 4382-4390 |
Number of pages | 9 |
Journal | Theoretical Computer Science |
Volume | 410 |
Issue number | 43 |
DOIs | |
State | Published - 6 Oct 2009 |
Bibliographical note
Funding Information:The authors wish to thank the anonymous referees who carefully read the original manuscript and provided comments that were invaluable to the flow and understandability of the paper. First author was partly supported by ISF grant 35/05.
Funding
The authors wish to thank the anonymous referees who carefully read the original manuscript and provided comments that were invaluable to the flow and understandability of the paper. First author was partly supported by ISF grant 35/05.
Funders | Funder number |
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Israel Science Foundation | 35/05 |
Keywords
- Approximate string matching
- Pattern matching
- Rearrangement distances