Distinct metabolic states of a cell guide alternate fates of mutational buffering through altered proteostasis

  • Kanika Verma
  • , Kanika Saxena
  • , Rajashekar Donaka
  • , Aseem Chaphalkar
  • , Manish Kumar Rai
  • , Anurag Shukla
  • , Zainab Zaidi
  • , Rohan Dandage
  • , Dhanasekaran Shanmugam
  • , Kausik Chakraborty

Research output: Contribution to journalArticlepeer-review

11 Scopus citations

Abstract

Metabolic changes alter the cellular milieu; can this also change intracellular protein folding? Since proteostasis can modulate mutational buffering, if change in metabolism has the ability to change protein folding, arguably, it should also alter mutational buffering. Here we find that altered cellular metabolic states in E. coli buffer distinct mutations on model proteins. Buffered-mutants have folding problems in vivo and are differently chaperoned in different metabolic states. Notably, this assistance is dependent upon the metabolites and not on the increase in canonical chaperone machineries. Being able to reconstitute the folding assistance afforded by metabolites in vitro, we propose that changes in metabolite concentrations have the potential to alter protein folding capacity. Collectively, we unravel that the metabolite pools are bona fide members of proteostasis and aid in mutational buffering. Given the plasticity in cellular metabolism, we posit that metabolic alterations may play an important role in cellular proteostasis.

Original languageEnglish
Article number2926
JournalNature Communications
Volume11
Issue number1
DOIs
StatePublished - 1 Dec 2020
Externally publishedYes

Bibliographical note

Publisher Copyright:
© 2020, The Author(s).

Funding

The work was done in K.C. Lab with the grant DST/SJF/LSA-01/2015-16 as Swarna Jayanthi Fellowship Grant from DST, and partly from BSC0124 from CSIR. Work in D.S. lab was funded through BSC0124 project from CSIR. Instrument support was also obtained from Wellcome Trust-DBT India Alliance (K.C. lab) and CSIR (D.S., K.C. lab). K.C. acknowledges CSIR and CSIR-IGIB for infrastructural support and High Performance Computational facility. K.V., R.D., A.C., M.R., and Z.Z. acknowledge CSIR; K.S. and R.D. acknowledge UGC; A.S. acknowledge ICMR, for fellowship support.

FundersFunder number
CSIR-IGIB
Department of Science and Technology, Ministry of Science and Technology, IndiaDST/SJF/LSA-01/2015-16
Indian Council of Medical Research
Council of Scientific and Industrial Research, India
University Grants Committee
The Wellcome Trust DBT India Alliance

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