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Approximate string matching with stuck address bits

  • Amihood Amir
  • , Estrella Eisenberg
  • , Orgad Keller
  • , Avivit Levy
  • , Ely Porat

Research output: Contribution to journalArticlepeer-review

2 Scopus citations

Abstract

A string S∈Σm can be viewed as a set of pairs ( si,i)|si∈S,i∈0,...,m-1. We follow the recent work on pattern matching with address errors and consider approximate pattern matching problems arising from the setting where errors are introduced to the location component (i), rather than the more traditional setting, where errors are introduced to the content itself (si). Specifically, we continue the work on string matching in the presence of address bit errors. In this paper, we consider the case where bits of i may be stuck, either in a consistent or transient manner. We formally define the corresponding approximate pattern matching problems, and provide efficient algorithms for their resolution.

Original languageEnglish
Pages (from-to)3537-3544
Number of pages8
JournalTheoretical Computer Science
Volume412
Issue number29
DOIs
StatePublished - 1 Jul 2011

Bibliographical note

Funding Information:
The first author is supported by NSF grant CCR-09-04581, ISF grant 347/09, and BSF grant 2008217. The fifth author’s work was supported by ISF, BSF and Google award.

Funding

The first author is supported by NSF grant CCR-09-04581, ISF grant 347/09, and BSF grant 2008217. The fifth author’s work was supported by ISF, BSF and Google award.

FundersFunder number
National Science FoundationCCR-09-04581
Google
United States-Israel Binational Science Foundation2008217
Israel Science Foundation347/09

    Keywords

    • Address errors
    • Approximate string matching
    • Pattern matching
    • String rearrangement metrics

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