An Analysis of Protein Folding Pathways

John Moult, Ron Unger

Research output: Contribution to journalArticlepeer-review

113 Scopus citations

Abstract

We have developed a model of the protein folding process based on three primary assumptions: that burying of hydrophobic area is the dominant contribution to the relative free energy of a conformation, that a record of the folding process is largely preserved in the final structure, and that the denatured state is a random coil. Detailed folding pathways are identified for 19 protein structures. The picture of the folding process that emerges from this analysis is one of nucleation by regions of 8–16 residues. Nucleation sites then lead to larger structures by two mechanisms: propagation and diffusion/collision. A Monte Carlo simulation is used to follow the folding pathway when propagation is the dominant mechanism. Because detailed pathways are derived for each protein, the models are susceptible to experimental verification.

Original languageEnglish
Pages (from-to)3816-3824
Number of pages9
JournalBiochemistry
Volume30
Issue number16
DOIs
StatePublished - 1 Apr 1991
Externally publishedYes

Funding

FundersFunder number
National Institute of General Medical SciencesR01GM041034

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