Abstract
A pair of 4D NMR experiments for the backbone assignment of disordered proteins is presented. The experiments exploit 13C direct detection and non-uniform sampling of the indirectly detected dimensions, and provide correlations of the aliphatic proton (H α, and H β) and carbon (C α, C β) resonance frequencies to the protein backbone. Thus, all the chemical shifts regularly used to map the transient secondary structure motifs in the intrinsically disordered proteins (H α, C α, C β, C0, and N) can be extracted from each spectrum. Compared to the commonly used assignment strategy based on matching the C α and Cb chemical shifts, inclusion of the H α and H β provides up to three extra resonance frequencies that decrease the chance of ambiguous assignment. The experiments were successfully applied to the original assignment of a 12.8 kDa intrinsically disordered protein having a high content of proline residues (26 %) in the sequence.
| Original language | English |
|---|---|
| Pages (from-to) | 139-148 |
| Number of pages | 10 |
| Journal | Journal of Biomolecular NMR |
| Volume | 53 |
| Issue number | 2 |
| DOIs | |
| State | Published - Jun 2012 |
Bibliographical note
Funding Information:Acknowledgments This work was supported by the project ‘‘CEI-TEC - Central European Institute of Technology’’ from European Regional Development Fund, grant number CZ.1.05/1.1.00/02.0068, (J. N., L. Z., and V. S.) and by the Czech Science Foundation, grant numbers P206/11/0758 (J. N., L. Z., and V. S.). J.H.C. acknowledges the support of a Legacy Heritage personal grant by the Israel Science Foundation. Financial support by the Access to Research Infrastructures activity in the 7th Framework Programme of the EC (Contract 228461, EAST-NMR) for conducting the research is gratefully acknowledged. The project is a part of Joint Research Activity in the 7th Framework program of the EC (BioNMR n. 261863).
Funding
Acknowledgments This work was supported by the project ‘‘CEI-TEC - Central European Institute of Technology’’ from European Regional Development Fund, grant number CZ.1.05/1.1.00/02.0068, (J. N., L. Z., and V. S.) and by the Czech Science Foundation, grant numbers P206/11/0758 (J. N., L. Z., and V. S.). J.H.C. acknowledges the support of a Legacy Heritage personal grant by the Israel Science Foundation. Financial support by the Access to Research Infrastructures activity in the 7th Framework Programme of the EC (Contract 228461, EAST-NMR) for conducting the research is gratefully acknowledged. The project is a part of Joint Research Activity in the 7th Framework program of the EC (BioNMR n. 261863).
| Funders | Funder number |
|---|---|
| Seventh Framework Programme | 228461, 261863 |
| European Commission | |
| Grantová Agentura České Republiky | P206/11/0758 |
| Israel Science Foundation | |
| Central European Institute of Technology | |
| European Regional Development Fund | CZ.1.05/1.1.00/02.0068 |
Keywords
- C detection
- Chemical shifts
- Intrinsically disordered proteins
- Nonuniform sampling
- Prolines assignment
- Residual secondary structure
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