Research output per year
Research output per year
Personal profile
About Me
Field: Bioinformatics
Research (active tab)
1. Deep learning in computational biology
2. Computational modeling of protein-DNA and -RNA binding and gene expression regulation
3. Prediction of DNA and RNA structures
4. Predicting protein variant effects based on high-throughput data
5. Algorithms to design DNA, RNA, and amino-acid sequences
6. Data structures and algorithms to analyze high-throughput sequencing data
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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A universal system for boosting gene expression in eukaryotic cell-lines
Vaknin, I., Willinger, O., Mandl, J., Heuberger, H., Ben-Ami, D., Zeng, Y., Goldberg, S., Orenstein, Y. & Amit, R., 16 Mar 2024, In: Nature Communications. 15, 1, 2394.Research output: Contribution to journal › Article › peer-review
Open Access -
DeepCRISTL: deep transfer learning to predict CRISPR/Cas9 on-target editing efficiency in specific cellular contexts
Elkayam, S., Tziony, I. & Orenstein, Y., 2 Aug 2024, In: Bioinformatics. 40, 8, btae481.Research output: Contribution to journal › Article › peer-review
Open Access -
Generating, modeling and evaluating a large-scale set of CRISPR/Cas9 off-target sites with bulges
Yaish, O. & Orenstein, Y., 8 Jul 2024, In: Nucleic Acids Research. 52, 12, p. 6777-6790 14 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
SWOffinder: Efficient and versatile search of CRISPR off-targets with bulges by Smith-Waterman alignment
Yaish, O., Malle, A., Cohen, E. & Orenstein, Y., 19 Jan 2024, In: iScience. 27, 1, 108557.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
An overview on nucleic-acid G-quadruplex prediction: from rule-based methods to deep neural networks
Elimelech-Zohar, K. & Orenstein, Y., 20 Jul 2023, In: Briefings in Bioinformatics. 24, 4, bbad252.Research output: Contribution to journal › Review article › peer-review
5 Scopus citations